Todd Hollon

Assistant Professor
University of Michigan
tocho (at) umich.edu


Bio

I am an Assistant Professor at the University of Michigan and the Principal Investigator of the Machine Learning in Neurosurgery (MLiNS) Lab. Our research focuses on developing machine intelligence that understands human health and disease, especially related to the nervous system. We aim to discover better data streams, model architectures, inductive biases, and learning objectives for medical AI. Our technical contributions include improved visual self-supervision, hierarchical and multimodal representation learning, and medical foundation modeling.

Photos and Bios of MLiNS Team

The team, the team, the team.

MLiNS News

MLiNS Research Themes

Selected Publications and Complete List

  1. Yiwei Lyu, Samir Harake, Asadur Chowdury, Soumyanil Banerjee, Rachel Gologorsky, Shixuan Liu, Anna-Katharina Meissner, Akshay Rao, Chenhui Zhao, Akhil Kondepudi, Cheng Jiang, Xinhai Hou, Rushikesh S. Joshi, Volker Neuschmelting, Ashok Srinivasan, Dawn Kleindorfer, Brian Athey, Vikas Gulani, Aditya Pandey, Honglak Lee, and Todd Hollon
    NATURE BIOMEDICAL ENGINEERING · 2026

    Introduces Prima, a visual foundation model for brain MRI trained at health-system scale for diagnosis, triage, and clinically grounded decision support.


  2. Akhil Kondepudi, Melike Pekmezci, Xinhai Hou, Katie Scotford, Cheng Jiang, Akshay Rao, Edward S. Harake, Asadur Chowdury, Wajd Al-Holou, Lin Wang, Aditya Pandey, Pedro R. Lowenstein, Maria G. Castro, Lisa Irina Koerner, Thomas Roetzer-Pejrimovsky, Georg Widhalm, Sandra Camelo-Piragua, Misha Movahed-Ezazi, Daniel A. Orringer, Honglak Lee, Christian Freudiger, Mitchel Berger, Shawn Hervey-Jumper, and Todd Hollon
    NATURE · 2025

    FastGlioma is a computational pathology model for real-time detection of glioma infiltration at the surgical margin, outperforming the current standard of care.


  3. Todd Hollon, Cheng Jiang, Asadur Chowdury, Mustafa Nasir-Moin, Akhil Kondepudi, Alexander Aabedi, Arjun Adapa, Wajd Al-Holou, Jason Heth, Oren Sagher, Pedro Lowenstein, Maria Castro, Lisa Irina Wadiura, Georg Widhalm, Volker Neuschmelting, David Reinecke, Niklas von Spreckelsen, Mitchel Berger, Shawn Hervey-Jumper, John Golfinos, Matija Snuderl, Sandra Camelo-Piragua, Christian Freudiger, Honglak Lee, and Daniel Orringer
    NATURE MEDICINE · 2023

    Diffuse gliomas are classified using the molecular features. DeepGlioma predicts the molecular genetics of brain tumors within minutes of biopsy, in the operating room, to better inform surgical goals.


  4. Todd C Hollon, Balaji Pandian, Arjun R Adapa, Esteban Urias, Akshay V Save, Siri Sahib S Khalsa, Daniel G Eichberg, Randy S D'Amico, Zia U Farooq, Spencer Lewis, Petros D Petridis, Tamara Marie, Ashish H Shah, Hugh J L Garton, Cormac O Maher, Jason A Heth, Erin L McKean, Stephen E Sullivan, Shawn L Hervey-Jumper, Parag G Patil, B Gregory Thompson, Oren Sagher, Guy M McKhann 2nd, Ricardo J Komotar, Michael E Ivan, Matija Snuderl, Marc L Otten, Timothy D Johnson, Michael B Sisti, Jeffrey N Bruce, Karin M Muraszko, Jay Trautman, Christian W Freudiger, Peter Canoll, Honglak Lee, Sandra Camelo-Piragua, Daniel A Orringer
    NATURE MEDICINE · 2020

    A deep learning workflow combining stimulated Raman histology with convolutional neural networks delivers near real-time intraoperative brain tumor diagnosis, matching pathologist accuracy while compressing turnaround from ~30 minutes to under 150 seconds.


  5. Yiwei Lyu, Chenhui Zhao, Soumyanil Banerjee, Shixuan Liu, Akshay T. Rao, Akhil Kondepudi, Honglak Lee, and Todd C. Hollon
    COMPUTER VISION AND PATTERN RECOGNITION · 2026

    Standard contrastive language-image pre-training can neglect objects in visual scenes. ItemizedCLIP forces models to learn and attend to all described items, resulting in better visual representations.


  6. Xinhai Hou, Shaoyuan Xu, Manan Biyani, Moyan Li, Jia Liu, Todd C. Hollon, and Bryan Wang
    COMPUTER VISION AND PATTERN RECOGNITION · 2026

    Recent visual agents can score well while using image tools unfaithfully-e.g., cropping irrelevant regions or ignoring tool outputs. CodeV represents tools as executable Python code and trains with Tool-Aware Policy Optimization (TAPO), using process-level rewards on visual tool inputs and outputs to improve both accuracy and faithful tool use on search and broader multimodal benchmarks.


  7. Chenhui Zhao, Yiwei Lyu, Asadur Zaman Chowdury, Edward S. Harake, Akhil Kondepudi, Akshay T. Rao, Xinhai Hou, Honglak Lee, and Todd C. Hollon
    TRANSACTIONS ON MACHINE LEARNING RESEARCH · 2026

    Vision-language pre-training for volumetric MRI and CT is usually limited by radiologist-curated datasets. HLIP instead uses hierarchical attention over slice, scan, and study to pre-train on uncurated clinical data at scale, boosting performance on public brain MRI and head CT benchmarks.


  8. Cheng Jiang*, Xinhai Hou*, Akhil Kondepudi, Asadur Chowdury, Christian W. Freudiger, Daniel A. Orringer, Honglak Lee, and Todd C. Hollon
    COMPUTER VISION AND PATTERN RECOGNITION · 2023

    HiDisc is a self-supervised learning method that leverages the inherent patient-slide-patch hierarchy of biomedical microscopy to learn stronger visual representations without explicit negative mining.


  9. Cheng Jiang*, Asadur Chowdury*, Xinhai Hou*, Akhil Kondepudi, Christian W. Freudiger, Kyle Conway, Sandra Camelo-Piragua, Daniel A. Orringer, Honglak Lee, and Todd C. Hollon
    NEURIPS DATASETS & BENCHMARKS · 2022

    OpenSRH is the first public dataset of clinical stimulated Raman histology images from brain tumor patients, released alongside benchmarks to accelerate machine learning research for intraoperative brain tumor diagnosis.


New Preprints

  1. Akhil Kondepudi, Akshay Rao, Chenhui Zhao, Yiwei Lyu, Samir Harake, Soumyanil Banerjee, Rushikesh Joshi, Anna-Katharina Meissner, Renly Hou, Cheng Jiang, Asadur Chowdury, Ashok Srinivasan, Brian Athey, Vikas Gulani, Aditya Pandey, Honglak Lee, and Todd Hollon
    arXiv 2026

    NeuroVFM is a visual foundation model trained on 5.24M clinical MRI and CT volumes via health system learning, a paradigm that leverages uncurated data from routine care. Using a scalable volumetric joint-embedding predictive architecture, it delivers state-of-the-art radiologic diagnosis and report generation with interpretable visual grounding, surpassing frontier models in accuracy, triage, and expert preference while reducing hallucinations.


  2. Herr S, Olshausen N, Pekmezci M, Kaur J, Sibih Y, Ambati V, Scotford K, Persad A, Picart T, Kondepudi A, Oberheim-Bush NA, Kim A, Young J, Berger MS, Sushil M, Hollon T, and Hervey-Jumper SL
    medRxiv 2025

    Using AI-quantified tumor infiltration from label-free optical microscopy of surgical margin tissue, combined with clinical, radiographic, and molecular features, a random forest model predicts sites of focal glioblastoma recurrence (validation AUC 80.3%). AI-derived infiltration was the strongest predictor, outperforming molecular features alone, pointing toward margin-guided precision adjuvant therapy for the highest-risk areas of disease.


MLiNS Videos and Podcasts

MLiNS video - watch on YouTube

AI Journeys Session (YouTube)

Michigan MICDE interview - watch on YouTube

UM MICDE interview

MICDE discussion - watch on YouTube

UM MICDE discussion

MLiNS video - watch on YouTube

CCMB Seminar 02/12/2025

More videos and podcasts here.

Support for MLiNS Lab

Please email me directly at tocho [at] med.umich.edu if you would like to support our effort. We are grateful for any contribution, big or small.