Todd Hollon

Assistant Professor
University of Michigan
tocho (at) umich.edu


Intelligent Histology

A major focus of the MLiNS lab is to combine stimulated Raman histology (SRH), a rapid label-free, optical imaging method, with deep learning and computer vision techniques to discover the molecular, cellular, and microanatomic features of skull base and malignant brain tumors. We are using SRH in our operating rooms to improve the speed and accuracy of brain tumor diagnosis. Our group has focused on deep learning-based computer vision methods for automated image interpretation, intraoperative diagnosis, and tumor margin delineation. Our work culminated in a multicenter, prospective, clinical trial, which demonstrated that AI interpretation of SRH images was equivalent in diagnostic accuracy to pathologist interpretation of conventional histology. We were able to show, for the first time, that a deep neural network is able to learn recognizable and interpretable histologic image features (e.g. tumor cellularity, nuclear morphology, infiltrative growth pattern, etc) in order to make a diagnosis. Our future work is directed at going beyond human-level interpretation towards identifying molecular/genetic features, single-cell classification, and predicting patient prognosis.

Figures

Workflow from diffuse glioma imaging and surgical resection through bedside SRH, whole-slide encoding with a vision transformer, FastGlioma scoring with weak ordinal supervision, and interpretability heatmaps.

  1. Xinhai Hou *, Akhil V. Kondepudi *, Cheng Jiang *, Yiwei Lyu, Edward Samir Harake, Asadur Chowdury, Anna-Katharina Meißner, Volker Neuschmelting, David Reinecke, Gina Fürtjes, Georg Widhalm, Lisa Irina Körner, Jakob Straehle, Nicolas Neidert, Pierre Scheffler, Jürgen Beck, Michael E. Ivan, Ashish H. Shah, Aditya S. Pandey, Sandra Camelo-Piragua, Dieter Henrik Heiland, Oliver Schnell, Chris Freudiger, Jacob Young, Melike Pekmezci, Katie Scotford, Shawn Hervey-Jumper, Daniel Orringer, Mitchel Berger, and Todd Hollon
    NEURO-ONCOLOGY ADVANCES · 2026

  2. Abhishek Bhattacharya, Eric Landgraf, Cheng Jiang, Asadur Chowdury, Akhil Kondepudi, Lin Wang, Edward S. Harake, Xinhai Hou, Lisa Walsh, and Todd C. Hollon
    STAR PROTOCOLS · 2025

  3. Akhil Kondepudi, Melike Pekmezci, Xinhai Hou, Katie Scotford, Cheng Jiang, Akshay Rao, Edward S. Harake, Asadur Chowdury, Wajd Al-Holou, Lin Wang, Aditya Pandey, Pedro R. Lowenstein, Maria G. Castro, Lisa Irina Koerner, Thomas Roetzer-Pejrimovsky, Georg Widhalm, Sandra Camelo-Piragua, Misha Movahed-Ezazi, Daniel A. Orringer, Honglak Lee, Christian Freudiger, Mitchel Berger, Shawn Hervey-Jumper, and Todd Hollon
    NATURE · 2025

    FastGlioma is a computational pathology model for real-time detection of glioma infiltration at the surgical margin, outperforming the current standard of care.


  4. Todd Hollon, Cheng Jiang, Asadur Chowdury, Mustafa Nasir-Moin, Akhil Kondepudi, Alexander Aabedi, Arjun Adapa, Wajd Al-Holou, Jason Heth, Oren Sagher, Pedro Lowenstein, Maria Castro, Lisa Irina Wadiura, Georg Widhalm, Volker Neuschmelting, David Reinecke, Niklas von Spreckelsen, Mitchel Berger, Shawn Hervey-Jumper, John Golfinos, Matija Snuderl, Sandra Camelo-Piragua, Christian Freudiger, Honglak Lee, and Daniel Orringer
    NATURE MEDICINE · 2023

    Diffuse gliomas are classified using the molecular features. DeepGlioma predicts the molecular genetics of brain tumors within minutes of biopsy, in the operating room, to better inform surgical goals.


  5. Cheng Jiang*, Xinhai Hou*, Akhil Kondepudi, Asadur Chowdury, Christian W. Freudiger, Daniel A. Orringer, Honglak Lee, and Todd C. Hollon
    COMPUTER VISION AND PATTERN RECOGNITION · 2023

    HiDisc is a self-supervised learning method that leverages the inherent patient-slide-patch hierarchy of biomedical microscopy to learn stronger visual representations without explicit negative mining.


  6. Cheng Jiang*, Asadur Chowdury*, Xinhai Hou*, Akhil Kondepudi, Christian W. Freudiger, Kyle Conway, Sandra Camelo-Piragua, Daniel A. Orringer, Honglak Lee, and Todd C. Hollon
    NEURIPS DATASETS & BENCHMARKS · 2022

    OpenSRH is the first public dataset of clinical stimulated Raman histology images from brain tumor patients, released alongside benchmarks to accelerate machine learning research for intraoperative brain tumor diagnosis.


  7. Todd C Hollon, Balaji Pandian, Arjun R Adapa, Esteban Urias, Akshay V Save, Siri Sahib S Khalsa, Daniel G Eichberg, Randy S D'Amico, Zia U Farooq, Spencer Lewis, Petros D Petridis, Tamara Marie, Ashish H Shah, Hugh J L Garton, Cormac O Maher, Jason A Heth, Erin L McKean, Stephen E Sullivan, Shawn L Hervey-Jumper, Parag G Patil, B Gregory Thompson, Oren Sagher, Guy M McKhann 2nd, Ricardo J Komotar, Michael E Ivan, Matija Snuderl, Marc L Otten, Timothy D Johnson, Michael B Sisti, Jeffrey N Bruce, Karin M Muraszko, Jay Trautman, Christian W Freudiger, Peter Canoll, Honglak Lee, Sandra Camelo-Piragua, Daniel A Orringer
    NATURE MEDICINE · 2020

    A deep learning workflow combining stimulated Raman histology with convolutional neural networks delivers near real-time intraoperative brain tumor diagnosis, matching pathologist accuracy while compressing turnaround from ~30 minutes to under 150 seconds.


  8. Todd C Hollon, Balaji Pandian, Esteban Urias, Akshay V Save, Arjun R Adapa, Sudharsan Srinivasan, Neil K Jairath, Zia Farooq, Tamara Marie, Wajd N Al-Holou, Karen Eddy, Jason A Heth, Siri Sahib S Khalsa, Kyle Conway, Oren Sagher, Jeffrey N Bruce, Peter Canoll, Christian W Freudiger, Sandra Camelo-Piragua, Honglak Lee, Daniel A Orringer
    NEURO-ONCOLOGY · 2021

  9. Siri Sahib S Khalsa, Todd C Hollon, Arjun Adapa, Esteban Urias, Sudharsan Srinivasan, Neil Jairath, Julianne Szczepanski, Peter Ouillette, Sandra Camelo-Piragua, Daniel A Orringer
    CNS ONCOLOGY · 2020

  10. Todd C Hollon, Spencer Lewis, Balaji Pandian, Yashar S Niknafs, Mia R Garrard, Hugh Garton, Cormac O Maher, Kathryn McFadden, Matija Snuderl, Andrew P Lieberman, Karin Muraszko, Sandra Camelo-Piragua, Daniel A Orringer
    CANCER RESEARCH · 2018

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